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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("procoil")
In most cases, you don't need to download the package archive at all.
procoil
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Prediction of Oligomerization of Coiled Coil Proteins
Bioconductor version: Release (3.4)
The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.
Author: Ulrich Bodenhofer
Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>
Citation (from within R,
enter citation("procoil")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("procoil")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("procoil")
| R Script | PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Classification, Proteomics, Software, SupportVectorMachine |
| Version | 2.2.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (6 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3.0), kebabs |
| Imports | methods, stats, graphics, S4Vectors, Biostrings, utils |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioinf.jku.at/software/procoil/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | procoil_2.2.0.tar.gz |
| Windows Binary | procoil_2.2.0.zip |
| Mac OS X 10.9 (Mavericks) | procoil_2.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/procoil/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/procoil/ |
| Package Downloads Report | Download Stats |
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