To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("piano")
In most cases, you don't need to download the package archive at all.
piano
|
|
|
|
|
|
|
|
Platform for integrative analysis of omics data
Bioconductor version: Release (3.4)
Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.
Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>
Maintainer: Leif Varemo <piano.rpkg at gmail.com>
Citation (from within R,
enter citation("piano")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("piano")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("piano")
| R Script | Piano - Platform for Integrative Analysis of Omics data | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization |
| Version | 1.14.5 |
| In Bioconductor since | BioC 2.12 (R-3.0) (4 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.14.0) |
| Imports | BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea |
| LinkingTo | |
| Suggests | yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi |
| SystemRequirements | |
| Enhances | |
| URL | http://www.sysbio.se/piano |
| BugReports | https://github.com/varemo/piano/issues |
| Depends On Me | |
| Imports Me | PharmacoGx |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | piano_1.14.5.tar.gz |
| Windows Binary | piano_1.14.5.zip |
| Mac OS X 10.9 (Mavericks) | piano_1.14.5.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/piano/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/piano/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
