To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("philr")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
PhILR is short for Phylogenetic Isometric Log-Ratio Transform. This package provides functions for the analysis of compositional data (e.g., data representing proportions of different variables/parts). Specifically this package allows analysis of compositional data where the parts can be related through a phylogenetic tree (as is common in microbiota survey data) and makes available the Isometric Log Ratio transform built from the phylogenetic tree and utilizing a weighted reference measure.
Author: Justin Silverman
Maintainer: Justin Silverman <jsilve24 at gmail.com>
Citation (from within R,
enter citation("philr")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("philr")
HTML | R Script | Introduction to PhILR |
Reference Manual | ||
Text | NEWS |
biocViews | Metagenomics, Microbiome, Sequencing, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
License | GPL-3 |
Depends | |
Imports | ape, phangorn, tidyr, ggplot2, ggtree |
LinkingTo | |
Suggests | testthat, knitr, rmarkdown, BiocStyle, phyloseq, glmnet, dplyr |
SystemRequirements | |
Enhances | |
URL | https://github.com/jsilve24/philr |
BugReports | https://github.com/jsilve24/philr/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | philr_1.0.0.tar.gz |
Windows Binary | philr_1.0.0.zip |
Mac OS X 10.9 (Mavericks) | philr_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/philr/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/philr/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: