- Home
- Bioconductor 3.4
- Software Packages
- msPurity
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msPurity")
In most cases, you don't need to download the package archive at all.
msPurity
|
|
|
|
|
|
|
|
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Bioconductor version: Release (3.4)
Assess the contribution of the targeted precursor in fragmentation acquired or anticipated isolation windows using a metric called "precursor purity". Also provides simple processing steps (averaging, filtering, blank subtraction, etc) for DI-MS data. Works for both LC-MS(/MS) and DI-MS(/MS) data.
Author: Thomas N. Lawson, Ralf Weber, Martin Jones, Mark Viant, Warwick Dunn
Maintainer: Thomas N. Lawson <thomas.nigel.lawson at gmail.com>
Citation (from within R,
enter citation("msPurity")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msPurity")
Documentation
| HTML | R Script | msPurity |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 2) |
| Depends | Rcpp |
| Imports | plyr, foreach, parallel, doSNOW, stringr, mzR, reshape2, fastcluster, ggplot2, sapa |
| LinkingTo | |
| Suggests | testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | msPurity_1.0.0.tar.gz |
| Windows Binary | msPurity_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | msPurity_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/msPurity/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/msPurity/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
