To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("makecdfenv")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.
Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
Citation (from within R,
enter citation("makecdfenv")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("makecdfenv")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("makecdfenv")
R Script | makecdfenv primer | |
Reference Manual |
biocViews | DataImport, OneChannel, Preprocessing, Software |
Version | 1.50.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 12 years) |
License | GPL (>= 2) |
Depends | R (>= 2.6.0), affyio |
Imports | Biobase, affy, methods, stats, utils, zlibbioc |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | altcdfenvs |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | makecdfenv_1.50.0.tar.gz |
Windows Binary | makecdfenv_1.50.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | makecdfenv_1.50.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/makecdfenv/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/makecdfenv/ |
Package Downloads Report | Download Stats |
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