To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ibh")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.
Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.
Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>
Citation (from within R,
enter citation("ibh")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ibh")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ibh")
R Script | ibh | |
Reference Manual |
biocViews | DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 2.8 (R-2.13) (6 years) |
License | GPL (>= 2) |
Depends | simpIntLists |
Imports | |
LinkingTo | |
Suggests | yeastCC, stats |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | ibh_1.22.0.tar.gz |
Windows Binary | ibh_1.22.0.zip |
Mac OS X 10.9 (Mavericks) | ibh_1.22.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/ibh/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/ibh/ |
Package Downloads Report | Download Stats |
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