To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("groHMM")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
A pipeline for the analysis of GRO-seq data.
Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus
Maintainer: Anusha Nagari <anusha.nagari at utsouthwestern.edu>, Venkat Malladi <venkat.malladi at utsouthwestern.edu>, Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>
Citation (from within R,
enter citation("groHMM")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("groHMM")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("groHMM")
R Script | groHMM tutorial | |
Reference Manual | ||
Text | NEWS |
biocViews | Sequencing, Software |
Version | 1.8.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (2.5 years) |
License | GPL-3 |
Depends | R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.9.25), IRanges(>= 2.5.27), GenomeInfoDb, GenomicRanges(>= 1.23.16), GenomicAlignments, rtracklayer |
Imports | |
LinkingTo | |
Suggests | BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene |
SystemRequirements | |
Enhances | |
URL | https://github.com/Kraus-Lab/groHMM |
BugReports | https://github.com/Kraus-Lab/groHMM/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | groHMM_1.8.0.tar.gz |
Windows Binary | groHMM_1.8.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | groHMM_1.8.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/groHMM/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/groHMM/ |
Package Downloads Report | Download Stats |
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