To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggcyto")
In most cases, you don't need to download the package archive at all.
ggcyto
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Visualize Cytometry data with ggplot
Bioconductor version: Release (3.4)
With the dedicated fority method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.
Author: Mike Jiang
Maintainer: Mike Jiang <wjiang2 at fhcrc.org>
Citation (from within R,
enter citation("ggcyto")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggcyto")
Documentation
| HTML | R Script | Feature summary of ggcyto |
| HTML | R Script | Quick plot for cytometry data |
| HTML | R Script | Visualize flowSet with ggcyto |
| HTML | R Script | Visualize GatingSet with ggcyto |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CellBasedAssays, FlowCytometry, Infrastructure, Software, Visualization |
| Version | 1.2.3 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
| License | Artistic-2.0 |
| Depends | methods, ggplot2 (>= 2.0.0), flowCore, ncdfFlow(>= 2.17.1), flowWorkspace(>= 3.17.24) |
| Imports | plyr, scales, data.table, RColorBrewer, gridExtra |
| LinkingTo | |
| Suggests | testthat, flowWorkspaceData, knitr, rmarkdown, flowStats, openCyto, flowViz |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/RGLab/ggcyto/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CytoML, flowCore, flowWorkspace |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ggcyto_1.2.3.tar.gz |
| Windows Binary | ggcyto_1.2.3.zip |
| Mac OS X 10.9 (Mavericks) | ggcyto_1.2.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ggcyto/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/ggcyto/ |
| Package Downloads Report | Download Stats |
Documentation »
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