To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("diffloop")
In most cases, you don't need to download the package archive at all.
|
|
|
|
|
|
|
![]() ![]() |
Bioconductor version: Release (3.4)
A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.
Author: Caleb Lareau [aut, cre], Martin Aryee [aut]
Maintainer: Caleb Lareau <caleblareau at g.harvard.edu>
Citation (from within R,
enter citation("diffloop")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("diffloop")
HTML | R Script | diffloop: Identifying differential DNA loops from chromatin topology data. |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DataImport, DataRepresentation, GO, Preprocessing, QualityControl, Software, Visualization |
Version | 1.2.2 |
In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
License | MIT + file LICENSE |
Depends | |
Imports | methods, GenomicRanges, foreach, plyr, dplyr, reshape2, ggplot2, matrixStats, Sushi, edgeR, locfit, statmod, biomaRt, GenomeInfoDb, S4Vectors, IRanges, grDevices, graphics, stats, utils, Biobase, readr, data.table, rtracklayer, pbapply, limma |
LinkingTo | |
Suggests | DESeq2, diffloopdata, ggrepel, knitr, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/aryeelab/diffloop |
BugReports | https://github.com/aryeelab/diffloop/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | diffloop_1.2.2.tar.gz |
Windows Binary | diffloop_1.2.2.zip |
Mac OS X 10.9 (Mavericks) | diffloop_1.2.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/diffloop/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/diffloop/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: