To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ctsGE")
In most cases, you don't need to download the package archive at all.
ctsGE
|
|
|
|
|
|
|
|
Clustering of Time Series Gene Expression data
Bioconductor version: Release (3.4)
Methodology for supervised clustering of potentially many predictor variables, such as genes etc., in time series datasets Provides functions that help the user assigning genes to predefined set of model profiles.
Author: Michal Sharabi-Schwager [aut, cre], Ron Ophir [aut]
Maintainer: Michal Sharabi-Schwager <michalsharabi at gmail.com>
Citation (from within R,
enter citation("ctsGE")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ctsGE")
Documentation
| HTML | R Script | ctsGE Package |
| Reference Manual |
Details
| biocViews | Bayesian, Clustering, DifferentialExpression, GeneExpression, GeneSetEnrichment, Genetics, RNASeq, Sequencing, Software, TimeCourse, Transcription |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.2) |
| Imports | ccaPP, ggplot2, limma, reshape2, shiny, stats, stringr, utils |
| LinkingTo | |
| Suggests | BiocStyle, dplyr, DT, GEOquery, knitr, pander, rmarkdown, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/michalsharabi/ctsGE |
| BugReports | https://github.com/michalsharabi/ctsGE/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ctsGE_1.0.0.tar.gz |
| Windows Binary | ctsGE_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | ctsGE_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ctsGE/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/ctsGE/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
