To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("covEB")
In most cases, you don't need to download the package archive at all.
covEB
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Empirical Bayes estimate of block diagonal covariance matrices
Bioconductor version: Release (3.4)
Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.
Author: C. Pacini
Maintainer: C. Pacini <clarepacini at gmail.com>
Citation (from within R,
enter citation("covEB")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("covEB")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("covEB")
| R Script | covEB | |
| Reference Manual |
Details
| biocViews | Bayesian, GeneExpression, Microarray, Preprocessing, RNASeq, Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats |
| Imports | |
| LinkingTo | |
| Suggests | curatedBladderData |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | covEB_1.0.0.tar.gz |
| Windows Binary | covEB_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | covEB_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/covEB/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/covEB/ |
| Package Downloads Report | Download Stats |
Documentation »
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