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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")
In most cases, you don't need to download the package archive at all.
chromDraw
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chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
Bioconductor version: Release (3.4)
ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.
Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University
Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>
Citation (from within R,
enter citation("chromDraw")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chromDraw")
| R Script | chromDraw | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software |
| Version | 2.4.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.0) |
| Imports | Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46) |
| LinkingTo | Rcpp |
| Suggests | |
| SystemRequirements | Rtools (>= 3.1) |
| Enhances | |
| URL | www.plantcytogenomics.org/chromDraw |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | chromDraw_2.4.0.tar.gz |
| Windows Binary | chromDraw_2.4.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | chromDraw_2.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/chromDraw/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/chromDraw/ |
| Package Downloads Report | Download Stats |
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