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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("attract")
In most cases, you don't need to download the package archive at all.
attract
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Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Bioconductor version: Release (3.4)
This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression.
Author: Jessica Mar
Maintainer: Samuel Zimmerman <sezimmer at einstein.yu.edu>
Citation (from within R,
enter citation("attract")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("attract")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("attract")
| R Script | Tutorial on How to Use the Functions in the \texttt{attract} Package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, GeneSetEnrichment, KEGG, Microarray, Pathways, RNASeq, Reactome, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (6.5 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 3.3.1), methods, AnnotationDbi |
| Imports | Biobase, limma, cluster, GOstats, graphics, stats, reactome.db, KEGGREST, org.Hs.eg.db, utils |
| LinkingTo | |
| Suggests | illuminaHumanv1.db |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | attract_1.26.0.tar.gz |
| Windows Binary | attract_1.26.0.zip |
| Mac OS X 10.9 (Mavericks) | attract_1.26.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/attract/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/attract/ |
| Package Downloads Report | Download Stats |
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