To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("R4RNA")
In most cases, you don't need to download the package archive at all.
R4RNA
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An R package for RNA visualization and analysis
Bioconductor version: Release (3.4)
A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.
Author: Daniel Lai, Irmtraud Meyer <irmtraud.meyer at cantab.net>
Maintainer: Daniel Lai <jujubix at cs.ubc.ca>
Citation (from within R,
enter citation("R4RNA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("R4RNA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("R4RNA")
| R Script | R4RNA | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
| License | GPL-3 |
| Depends | R (>= 3.2.0), Biostrings(>= 2.38.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.e-rna.org/r-chie/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | R4RNA_1.2.0.tar.gz |
| Windows Binary | R4RNA_1.2.0.zip |
| Mac OS X 10.9 (Mavericks) | R4RNA_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/R4RNA/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/R4RNA/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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- Course and conference material.
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- Community resources and tutorials.
R / CRAN packages and documentation
Support »
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