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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetCirc")
In most cases, you don't need to download the package archive at all.
MetCirc
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A workflow to analyse and visualise metabolomics data
Bioconductor version: Release (3.4)
MetCirc comprises a workflow to interactively explore metabolomics data: create MSP, bin m/z values, calculate similarity between precursors and visualise similarities.
Author: Thomas Naake <thomasnaake at googlemail.com> and Emmanuel Gaquerel <emmanuel.gaquerel at cos.uni-heidelberg.de>
Maintainer: Thomas Naake <thomasnaake at googlemail.com>
Citation (from within R,
enter citation("MetCirc")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetCirc")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetCirc")
| R Script | Workflow for Metabolomics | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, Software, Visualization |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3), amap (>= 0.8), circlize (>= 0.3.5), graphics (>= 3.3), grDevices (>= 3.3), methods (>= 3.3), scales (>= 0.3.0), shiny (>= 0.13.1), stats (>= 3.3) |
| Imports | |
| LinkingTo | |
| Suggests | BiocGenerics, knitr (>= 1.11) |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MetCirc_1.0.1.tar.gz |
| Windows Binary | MetCirc_1.0.1.zip |
| Mac OS X 10.9 (Mavericks) | MetCirc_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MetCirc/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/MetCirc/ |
| Package Downloads Report | Download Stats |
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