- Home
- Bioconductor 3.4
- Software Packages
- MergeMaid
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MergeMaid")
In most cases, you don't need to download the package archive at all.
MergeMaid
|
|
|
|
|
|
|
|
Merge Maid
Bioconductor version: Release (3.4)
The functions in this R extension are intended for cross-study comparison of gene expression array data. Required from the user is gene expression matrices, their corresponding gene-id vectors and other useful information, and they could be 'list','matrix', or 'ExpressionSet'. The main function is 'mergeExprs' which transforms the input objects into data in the merged format, such that common genes in different datasets can be easily found. And the function 'intcor' calculate the correlation coefficients. Other functions use the output from 'modelOutcome' to graphically display the results and cross-validate associations of gene expression data with survival.
Author: Xiaogang Zhong <zhong at ams.jhu.edu> Leslie Cope <cope at jhu.edu> Elizabeth Garrett <esg at jhu.edu> Giovanni Parmigiani <gp at jhu.edu>
Maintainer: Xiaogang Zhong <zhong at ams.jhu.edu>
Citation (from within R,
enter citation("MergeMaid")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MergeMaid")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MergeMaid")
| MergeMaid primer | ||
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Software, Visualization |
| Version | 2.46.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 12 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), survival, Biobase, MASS, methods |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://astor.som.jhmi.edu/MergeMaid |
| Depends On Me | |
| Imports Me | metaArray, XDE |
| Suggests Me | oneChannelGUI |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MergeMaid_2.46.0.tar.gz |
| Windows Binary | MergeMaid_2.46.0.zip |
| Mac OS X 10.9 (Mavericks) | MergeMaid_2.46.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MergeMaid/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/MergeMaid/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
