To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImpulseDE")

In most cases, you don't need to download the package archive at all.

ImpulseDE

 

   

Detection of DE genes in time series data using impulse models

Bioconductor version: Release (3.4)

ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.

Author: Jil Sander [aut, cre], Nir Yosef [aut]

Maintainer: Jil Sander <jil.sander at uni-bonn.de>, Nir Yosef <niryosef at berkeley.edu>

Citation (from within R, enter citation("ImpulseDE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImpulseDE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ImpulseDE")

 

PDF R Script ImpulseDE
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, StatisticalMethod, TimeCourse
Version 1.0.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License GPL-3
Depends graphics, grDevices, stats, utils, parallel, compiler, R (>= 3.2.3)
Imports amap, boot
LinkingTo
Suggests longitudinal, knitr
SystemRequirements
Enhances
URL https://github.com/YosefLab/ImpulseDE
BugReports https://github.com/YosefLab/ImpulseDE/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ImpulseDE_1.0.0.tar.gz
Windows Binary ImpulseDE_1.0.0.zip
Mac OS X 10.9 (Mavericks) ImpulseDE_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ImpulseDE/tree/release-3.4
Package Short Url http://bioconductor.org/packages/ImpulseDE/
Package Downloads Report Download Stats

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