To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")

In most cases, you don't need to download the package archive at all.

ENCODExplorer

A compilation of ENCODE metadata

Bioconductor version: Release (3.4)

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant [aut, cre], Audrey Lemacon [aut], Arnaud Droit [aut], Louis Gendron [ctb], Astrid-Louise Deschenes [ctb]

Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>

Citation (from within R, enter citation("ENCODExplorer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")

Documentation

HTML	R Script	Data update
HTML	R Script	Database model
HTML	R Script	Introduction to ENCODExplorer
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	2.0.6
In Bioconductor since	BioC 3.1 (R-3.2) (2 years)
License	Artistic-2.0
Depends	R (>= 3.3), shiny, DT, shinythemes
Imports	tools, jsonlite, parallel, RCurl, tidyr, data.table, dplyr, stringr, stringi
LinkingTo
Suggests	RUnit, BiocGenerics, knitr, curl, httr
SystemRequirements
Enhances
URL
BugReports	https://github.com/CharlesJB/ENCODExplorer/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ENCODExplorer_2.0.6.tar.gz
Windows Binary	ENCODExplorer_2.0.6.zip
Mac OS X 10.9 (Mavericks)	ENCODExplorer_2.0.6.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ENCODExplorer/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/ENCODExplorer/
Package Downloads Report	Download Stats

Documentation »

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