- Home
- Bioconductor 3.4
- Software Packages
- DNABarcodes
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNABarcodes")
In most cases, you don't need to download the package archive at all.
DNABarcodes
|
|
|
|
|
|
|
|
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
Bioconductor version: Release (3.4)
The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.
Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
Citation (from within R,
enter citation("DNABarcodes")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNABarcodes")
Documentation
| HTML | R Script | DNABarcodes |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Preprocessing, Sequencing, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | GPL-2 |
| Depends | Matrix, parallel |
| Imports | Rcpp (>= 0.11.2), BH |
| LinkingTo | Rcpp, BH |
| Suggests | knitr, BiocStyle, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DNABarcodes_1.4.0.tar.gz |
| Windows Binary | DNABarcodes_1.4.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | DNABarcodes_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DNABarcodes/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/DNABarcodes/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
