To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("COMPASS")
In most cases, you don't need to download the package archive at all.
|
|
|
|
|
|
|
![]() ![]() |
Bioconductor version: Release (3.4)
COMPASS is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject's immune response to external stimuli such as infection or vaccination.
Author: Lynn Lin, Kevin Ushey, Greg Finak, Ravio Kolde (pheatmap)
Maintainer: Greg Finak <gfinak at fhcrc.org>
Citation (from within R,
enter citation("COMPASS")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("COMPASS")
HTML | R Script | COMPASS |
Reference Manual | ||
Text | NEWS |
biocViews | FlowCytometry, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (3 years) |
License | Artistic-2.0 |
Depends | R (>= 3.0.2) |
Imports | Rcpp, data.table, RColorBrewer, scales, grid, plyr, knitr, abind, clue, grDevices, utils, pdist |
LinkingTo | Rcpp (>= 0.11.0) |
Suggests | flowWorkspace(>= 3.9.66), flowCore, ncdfFlow, shiny, testthat, devtools, Kmisc, flowWorkspaceData |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/RGLab/COMPASS/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | COMPASS_1.12.0.tar.gz |
Windows Binary | COMPASS_1.12.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | COMPASS_1.12.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/COMPASS/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/COMPASS/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: