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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BayesKnockdown")
In most cases, you don't need to download the package archive at all.
BayesKnockdown
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BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
Bioconductor version: Release (3.4)
A simple, fast Bayesian method for computing posterior probabilities for relationships between a single predictor variable and multiple potential outcome variables, incorporating prior probabilities of relationships. In the context of knockdown experiments, the predictor variable is the knocked-down gene, while the other genes are potential targets. Can also be used for differential expression/2-class data.
Author: William Chad Young
Maintainer: William Chad Young <wmchad at uw.edu>
Citation (from within R,
enter citation("BayesKnockdown")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BayesKnockdown")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BayesKnockdown")
| R Script | BayesKnockdown.pdf | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bayesian, GeneExpression, GeneTarget, Network, NetworkInference, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.3) |
| Imports | stats, Biobase |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | BayesKnockdown_1.0.0.tar.gz |
| Windows Binary | BayesKnockdown_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | BayesKnockdown_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/BayesKnockdown/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/BayesKnockdown/ |
| Package Downloads Report | Download Stats |
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