To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ASAFE")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.
Author: Qian Zhang <qszhang at uw.edu>
Maintainer: Qian Zhang <qszhang at uw.edu>
Citation (from within R,
enter citation("ASAFE")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ASAFE")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASAFE")
R Script | ASAFE (Ancestry Specific Allele Frequency Estimation) | |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | BiomedicalInformatics, ExperimentalDesign, Genetics, GenomeWideAssociation, LinkageDisequilibrium, SNP, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2) |
Imports | |
LinkingTo | |
Suggests | knitr, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | ASAFE_1.0.0.tar.gz |
Windows Binary | ASAFE_1.0.0.zip |
Mac OS X 10.9 (Mavericks) | ASAFE_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/ASAFE/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/ASAFE/ |
Package Downloads Report | Download Stats |
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