To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CopyhelpeR")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.
Author: Thomas Kuilman
Maintainer: Thomas Kuilman <t.kuilman at nki.nl>
Citation (from within R,
enter citation("CopyhelpeR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CopyhelpeR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyhelpeR")
R Script | CopyhelpeR | |
Reference Manual | ||
Text | NEWS |
biocViews | ExperimentData, GenomicSequence, Homo_sapiens |
Version | 1.4.0 |
License | GPL-2 |
Depends | R (>= 2.10) |
Imports | |
LinkingTo | |
Suggests | BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | CopywriteR |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | CopyhelpeR_1.4.0.tar.gz |
Windows Binary | |
Mac OS X 10.9 (Mavericks) | |
Subversion source | (username/password: readonly) |
Package Short Url | http://bioconductor.org/packages/CopyhelpeR/ |
Package Downloads Report | Download Stats |
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