To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("similaRpeak")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
This package calculates metrics which assign a level of similarity between ChIP-Seq profiles.
Author: Astrid Deschenes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid Louise Deschenes <Astrid-Louise.Deschenes at crchudequebec.ulaval.ca>
Citation (from within R,
enter citation("similaRpeak")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("similaRpeak")
HTML | R Script | Similarity between two ChIP-Seq profiles |
Reference Manual | ||
Text | NEWS |
biocViews | BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software |
Version | 1.4.2 |
In Bioconductor since | BioC 3.1 (R-3.2) (1.5 years) |
License | Artistic-2.0 |
Depends | R6 (>= 2.0) |
Imports | rtracklayer, GenomicAlignments, Rsamtools |
LinkingTo | |
Suggests | RUnit, BiocGenerics, knitr, BiocStyle |
SystemRequirements | |
Enhances | |
URL | https://github.com/adeschen/similaRpeak |
BugReports | https://github.com/adeschen/similaRpeak/issues |
Depends On Me | |
Imports Me | |
Suggests Me | metagene |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | similaRpeak_1.4.2.tar.gz |
Windows Binary | similaRpeak_1.4.2.zip |
Mac OS X 10.9 (Mavericks) | similaRpeak_1.4.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/similaRpeak/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/similaRpeak/ |
Package Downloads Report | Download Stats |
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