To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("htSeqTools")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.
Author: Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell
Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>
Citation (from within R,
enter citation("htSeqTools")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("htSeqTools")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("htSeqTools")
R Script | Manual for the htSeqTools library | |
Reference Manual | ||
Text | NEWS |
biocViews | QualityControl, Sequencing, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (5 years) |
License | GPL (>=2) |
Depends | R (>= 2.12.2), methods, BiocGenerics(>= 0.1.0), Biobase, S4Vectors, IRanges, methods, MASS, BSgenome, GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.17.11) |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | parallel, multicore |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | htSeqTools_1.18.0.tar.gz |
Windows Binary | htSeqTools_1.18.0.zip |
Mac OS X 10.9 (Mavericks) | htSeqTools_1.18.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/htSeqTools/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/htSeqTools/ |
Package Downloads Report | Download Stats |
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