To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TSCAN")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
Citation (from within R,
enter citation("TSCAN")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TSCAN")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TSCAN")
R Script | TSCAN: Tools for Single-Cell ANalysis | |
Reference Manual |
biocViews | GUI, GeneExpression, Software, Visualization |
Version | 1.10.2 |
In Bioconductor since | BioC 3.0 (R-3.1) (2 years) |
License | GPL(>=2) |
Depends | R (>= 2.10.0) |
Imports | ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots |
LinkingTo | |
Suggests | knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | TSCAN_1.10.2.tar.gz |
Windows Binary | TSCAN_1.10.2.zip |
Mac OS X 10.9 (Mavericks) | TSCAN_1.10.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/TSCAN/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/TSCAN/ |
Package Downloads Report | Download Stats |
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