To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("EGSEA")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.3)
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
Author: Monther Alhamdoosh, Milica Ng and Matthew Ritchie
Maintainer: Monther Alhamdoosh <m.hamdoosh at gmail.com>
Citation (from within R,
enter citation("EGSEA")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("EGSEA")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EGSEA")
R Script | EGSEA vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, GO, GeneExpression, GeneSetEnrichment, Genetics, GraphAndNetwork, KEGG, Metabolomics, Microarray, MultipleComparison, OneChannel, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology, TwoChannel |
Version | 1.0.3 |
In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
License | GPL-2 |
Depends | R (>= 3.3), Biobase, gage(>= 2.14.4), AnnotationDbi, topGO(>= 2.16.0), pathview(>= 1.4.2) |
Imports | PADOG(>= 1.6.0), GSVA(>= 1.12.0), globaltest(>= 5.18.0), limma(>= 3.20.9), edgeR(>= 3.6.8), HTMLUtils (>= 0.1.5), hwriter (>= 1.2.2), gplots (>= 2.14.2), ggplot2 (>= 1.0.0), safe(>= 3.4.0), stringi (>= 0.5.0), parallel, stats, grDevices, graphics, utils, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, EGSEAdata |
LinkingTo | |
Suggests | BiocStyle, knitr, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | EGSEAdata |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | EGSEA_1.0.3.tar.gz |
Windows Binary | EGSEA_1.0.3.zip |
Mac OS X 10.9 (Mavericks) | EGSEA_1.0.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/EGSEA/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/EGSEA/ |
Package Downloads Report | Download Stats |
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