To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CopyNumber450k")
In most cases, you don't need to download the package archive at all.
|
|
|
|
|
|
|
![]() ![]() |
Bioconductor version: Release (3.3)
This package contains a set of functions that allow CNV calling from Illumina 450k methylation microarrays.
Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay
Maintainer: Simon Papillon-Cavanagh <simon.papillon-cavanagh at mail.mcgill.ca>
Citation (from within R,
enter citation("CopyNumber450k")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CopyNumber450k")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyNumber450k")
R Script | CopyNumber450k User's Guide | |
Reference Manual |
biocViews | CopyNumberVariation, DNAMethylation, Microarray, Preprocessing, QualityControl, Software |
Version | 1.8.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (2.5 years) |
License | Artistic-2.0 |
Depends | Biobase, minfi, DNAcopy, preprocessCore, BiocGenerics |
Imports | methods |
LinkingTo | |
Suggests | CopyNumber450kData, minfiData |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | CopyNumber450k_1.8.0.tar.gz |
Windows Binary | CopyNumber450k_1.8.0.zip |
Mac OS X 10.9 (Mavericks) | CopyNumber450k_1.8.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/CopyNumber450k/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/CopyNumber450k/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: