sagenhaft
This is the development version of sagenhaft; for the stable release version, see sagenhaft.
Collection of functions for reading and comparing SAGE libraries
Bioconductor version: Development (3.21)
This package implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison. Sequencing error correction is implementing using an Expectation Maximization Algorithm based on a Mixture Model of tag counts.
Author: Tim Beissbarth <tim.beissbarth at bioinf.med.uni-goettingen.de>, with contributions from Gordon Smyth <smyth at wehi.edu.au>
Maintainer: Tim Beissbarth <tim.beissbarth at bioinf.med.uni-goettingen.de>
citation("sagenhaft")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("sagenhaft")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sagenhaft")
SAGEnhaft | R Script | |
Reference Manual |
Details
biocViews | SAGE, Software |
Version | 1.77.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.10), SparseM (>= 0.73), methods |
Imports | graphics, stats, utils |
System Requirements | |
URL | http://www.bioinf.med.uni-goettingen.de |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | sagenhaft_1.77.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/sagenhaft |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sagenhaft |
Bioc Package Browser | https://code.bioconductor.org/browse/sagenhaft/ |
Package Short Url | https://bioconductor.org/packages/sagenhaft/ |
Package Downloads Report | Download Stats |