| Depends On Me |
AffiXcan, AllelicImbalance, BiSeq, BiocSklearn, CAGEfightR, CSSQ, CoreGx, DESeq2, DEXSeq, DMCFB, DMCHMM, DaMiRseq, DeMixT, DiffBind, EnrichmentBrowser, EventPointer, ExperimentSubset, ExpressionAtlas, FEAST, FRASER, GRmetrics, GSEABenchmarkeR, GenomicAlignments, GenomicFiles, GenomicSuperSignature, HERON, HelloRanges, HiCDOC, ISLET, IntEREst, InteractionSet, LoomExperiment, MBASED, MGnifyR, MICSQTL, MatrixQCvis, MetNet, MultiAssayExperiment, NADfinder, NBAMSeq, NewWave, OUTRIDER, PRONE, PhIPData, QTLExperiment, REMP, RegEnrich, SDAMS, SEtools, SGSeq, Scale4C, SeqGate, SingleCellExperiment, SingleR, TENxIO, TREG, TissueEnrich, UMI4Cats, VanillaICE, VariantAnnotation, VariantExperiment, alabaster.se, atena, bambu, betaHMM, bnbc, broadSeq, bsseq, celaref, clusterExperiment, coseq, csaw, deepSNV, diffHic, diffcoexp, dinoR, divergence, epigenomix, evaluomeR, extraChIPs, hermes, hipathia, iSEE, iSEEhex, iSEEhub, iSEEindex, isomiRs, ivygapSE, lefser, lipidr, lute, made4, methrix, methylPipe, miaViz, mia, minfi, moanin, mpra, multistateQTL, orthos, padma, phenomis, profileplyr, qmtools, qsvaR, recount3, recount, rqt, runibic, scAnnotatR, scGPS, scTreeViz, scone, screenCounter, sechm, signatureSearch, singleCellTK, soGGi, spillR, spqn, ssPATHS, stageR, survtype, tidyCoverage, tidySummarizedExperiment, velociraptor, weitrix, yamss, zinbwave, airway, benchmarkfdrData2019, BioPlex, bodymapRat, celldex, curatedAdipoChIP, curatedAdipoRNA, curatedMetagenomicData, fission, GSVAdata, HDCytoData, HighlyReplicatedRNASeq, HMP16SData, MetaGxOvarian, MetaGxPancreas, MethylSeqData, MicrobiomeBenchmarkData, microbiomeDataSets, microRNAome, MouseGastrulationData, MouseThymusAgeing, ObMiTi, parathyroidSE, sampleClassifierData, scMultiome, spatialDmelxsim, spqnData, timecoursedata, tuberculosis, TumourMethData, DRomics, OncoSubtype, ordinalbayes |
| Imports Me |
ADAM, ADImpute, ALDEx2, APAlyzer, ASICS, ASURAT, ATACseqTFEA, AUCell, BASiCS, BASiCStan, BBCAnalyzer, BERT, BUMHMM, BUScorrect, BUSseq, Banksy, BatchQC, BayesSpace, BiSeq, BioGA, BioNERO, BloodGen3Module, CAGEr, CATALYST, CBEA, CDI, CHETAH, CNVRanger, CNVfilteR, COTAN, CTSV, CTexploreR, CaDrA, CatsCradle, CeTF, CellMixS, CellScore, CellTrails, CelliD, Cepo, ChIPpeakAnno, ChromSCape, CiteFuse, CleanUpRNAseq, CoGAPS, CopyNumberPlots, CuratedAtlasQueryR, DAMEfinder, DEFormats, DEGreport, DELocal, DEScan2, DESpace, DEWSeq, DMRcate, DifferentialRegulation, Dino, DiscoRhythm, DominoEffect, DropletUtils, Dune, ELMER, EWCE, EpiMix, FLAMES, FeatSeekR, FindIT2, FuseSOM, GARS, GEOquery, GRaNIE, GSVA, GWENA, GeneTonic, GeoTcgaData, Glimma, GreyListChIP, HarmonizR, HiContacts, HybridExpress, IFAA, ILoReg, INSPEcT, IgGeneUsage, IsoBayes, IsoformSwitchAnalyzeR, LACE, MADSEQ, MAI, MAST, MBQN, MEAL, MEAT, MEB, MLInterfaces, MLSeq, MPAC, MPRAnalyze, MSPrep, MWASTools, MetaNeighbor, MetaboAnnotation, MethylAid, MicrobiotaProcess, MinimumDistance, MoonlightR, MsExperiment, MsFeatures, MuData, MultiDataSet, MultiRNAflow, NanoMethViz, Nebulosa, NetActivity, NormalyzerDE, ORFik, OVESEG, PAIRADISE, PIUMA, POMA, POWSC, PepSetTest, PharmacoGx, PhosR, PureCN, QFeatures, R453Plus1Toolbox, RNAAgeCalc, RNAsense, RTCGAToolbox, RTN, RadioGx, RaggedExperiment, RareVariantVis, RcisTarget, Rmmquant, RolDE, SBGNview, SC3, SCArray.sat, SCArray, SCnorm, SNPhood, SPIAT, SVMDO, SigsPack, SimBu, SingleCellAlleleExperiment, SpaNorm, Spaniel, SpatialCPie, SpatialExperiment, SpatialFeatureExperiment, SpliceWiz, SplicingFactory, SpotClean, StabMap, Statial, StructuralVariantAnnotation, TCGAbiolinks, TCGAutils, TCseq, TOAST, TSCAN, TTMap, TVTB, ToxicoGx, TrajectoryUtils, TreeSummarizedExperiment, Trendy, UCell, VAExprs, VDJdive, VariantFiltering, VisiumIO, aggregateBioVar, airpart, animalcules, anota2seq, apeglm, appreci8R, autonomics, awst, barcodetrackR, batchelor, bayNorm, beer, bettr, biosigner, biotmle, biovizBase, biscuiteer, blacksheepr, cBioPortalData, ccImpute, ccfindR, celda, censcyt, chromVAR, clustifyr, cmapR, comapr, combi, concordexR, condiments, consICA, consensusDE, corral, countsimQC, cydar, cypress, cytoKernel, cytofQC, cytomapper, cytoviewer, debCAM, debrowser, decompTumor2Sig, decontX, deltaCaptureC, demuxSNP, diffUTR, diffcyt, distinct, dittoSeq, doppelgangR, doseR, easyRNASeq, eisaR, epigraHMM, epimutacions, epiregulon.extra, epiregulon, epistack, epivizrData, erma, escape, escheR, fcScan, findIPs, fishpond, gCrisprTools, gDNAx, gDRcore, gDRimport, gDRutils, gINTomics, gemma.R, genomicInstability, getDEE2, ggbio, ggsc, ggspavis, glmGamPoi, glmSparseNet, gscreend, gwasurvivr, hoodscanR, hummingbird, iNETgrate, iSEEde, iSEEfier, iSEEpathways, iSEEtree, iSEEu, iasva, icetea, imcRtools, infercnv, kmcut, lemur, limpca, lineagespot, lionessR, lisaClust, mariner, marr, mastR, mbkmeans, metabolomicsWorkbenchR, metaseqR2, methyLImp2, methylscaper, methylumi, miRSM, miaSim, midasHLA, miloR, missMethyl, mobileRNA, monaLisa, mosdef, motifbreakR, motifmatchr, msgbsR, msqrob2, multiWGCNA, mumosa, musicatk, netSmooth, nipalsMCIA, nnSVG, oligoClasses, omicRexposome, omicsPrint, omicsViewer, oncomix, ontoProc, pairedGSEA, pairkat, peco, pgxRpi, phenopath, pipeComp, planttfhunter, plyxp, pmp, proActiv, proDA, psichomics, qsmooth, quantiseqr, rScudo, raer, receptLoss, regionReport, regsplice, rgsepd, rifiComparative, rifi, roar, ropls, sSNAPPY, saseR, satuRn, scBFA, scCB2, scDD, scDDboost, scDblFinder, scDesign3, scDiagnostics, scHOT, scMET, scMerge, scMultiSim, scPipe, scReClassify, scRepertoire, scTGIF, scater, scds, scider, scmap, scmeth, scoreInvHap, scp, scran, scruff, scry, scuttle, scviR, segmenter, seqCAT, sesame, sigFeature, simPIC, simpleSeg, singscore, slalom, slingshot, smartid, smoothclust, snapcount, spaSim, spatialDE, spatialHeatmap, spatialSimGP, spatzie, spicyR, splatter, spoon, stJoincount, standR, struct, supersigs, switchde, systemPipeR, systemPipeTools, tenXplore, tidySingleCellExperiment, tidySpatialExperiment, tidybulk, tomoda, tpSVG, tradeSeq, transformGamPoi, transmogR, treeclimbR, tricycle, tximeta, vidger, wpm, xenLite, zFPKM, zellkonverter, zitools, BloodCancerMultiOmics2017, brgedata, CLLmethylation, COSMIC.67, curatedTCGAData, easierData, emtdata, FieldEffectCrc, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, GSE13015, HCATonsilData, HiBED, HMP2Data, homosapienDEE2CellScore, IHWpaper, LegATo, MerfishData, MetaGxBreast, MetaScope, orthosData, scRNAseq, SingleCellMultiModal, spatialLIBD, TabulaMurisSenisData, TCGAWorkflowData, TENxXeniumData, ExpHunterSuite, fluentGenomics, SingscoreAMLMutations, TCGAWorkflow, autoGO, DWLS, ggpicrust2, HeritSeq, imcExperiment, karyotapR, MetAlyzer, microbial, MOCHA, multimedia, PlasmaMutationDetector, PlasmaMutationDetector2, RNAseqQC, SC.MEB, SCIntRuler, SCRIP, scROSHI, SpatialDDLS, treediff, VSOLassoBag |
| Suggests Me |
ANCOMBC, AlpsNMR, AnnotationHub, BindingSiteFinder, BiocPkgTools, CTdata, DelayedArray, EnMCB, GENIE3, GenomicRanges, HDF5Array, HPiP, Informeasure, InteractiveComplexHeatmap, MOFA2, MatrixGenerics, PSMatch, RiboProfiling, Rvisdiff, S4Vectors, SPOTlight, TFutils, alabaster.mae, biobroom, cageminer, dar, dcanr, dce, dearseq, decoupleR, easier, edgeR, epialleleR, epivizrChart, epivizr, esetVis, fobitools, funOmics, gDR, globalSeq, gsean, hca, interactiveDisplay, knowYourCG, microSTASIS, pathwayPCA, philr, podkat, scFeatureFilter, semisup, sketchR, sparrow, svaNUMT, svaRetro, systemPipeShiny, tidytof, updateObject, biotmleData, curatedAdipoArray, curatedTBData, dorothea, DuoClustering2018, gDRtestData, GSE103322, multiWGCNAdata, pRolocdata, RforProteomics, SBGNview.data, tissueTreg, CAGEWorkflow, Canek, clustree, conos, CytoSimplex, dyngen, file2meco, lfc, MiscMetabar, parafac4microbiome, polyRAD, RaceID, rliger, seqgendiff, Seurat, Signac, singleCellHaystack, speakeasyR, SuperCell, teal.slice, tidydr, volcano3D |
