SigFuge
This is the development version of SigFuge; for the stable release version, see SigFuge.
SigFuge
Bioconductor version: Development (3.21)
Algorithm for testing significance of clustering in RNA-seq data.
Author: Patrick Kimes, Christopher Cabanski
Maintainer: Patrick Kimes <patrick.kimes at gmail.com>
Citation (from within R, enter
citation("SigFuge")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SigFuge")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SigFuge")| SigFuge Tutorial | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, ImmunoOncology, RNASeq, Software, Visualization |
| Version | 1.45.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | GPL-3 |
| Depends | R (>= 3.5.0), GenomicRanges |
| Imports | ggplot2, matlab, reshape, sigclust |
| System Requirements | |
| URL |
See More
| Suggests | org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SigFuge_1.45.0.tar.gz |
| Windows Binary (x86_64) | SigFuge_1.45.0.zip (64-bit only) |
| macOS Binary (x86_64) | SigFuge_1.45.0.tgz |
| macOS Binary (arm64) | SigFuge_1.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SigFuge |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SigFuge |
| Bioc Package Browser | https://code.bioconductor.org/browse/SigFuge/ |
| Package Short Url | https://bioconductor.org/packages/SigFuge/ |
| Package Downloads Report | Download Stats |