RBioFormats
This is the development version of RBioFormats; for the stable release version, see RBioFormats.
R interface to Bio-Formats
Bioconductor version: Development (3.21)
An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.
Author: Andrzej Oleś [aut, cre] (ORCID:
Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>
citation("RBioFormats")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RBioFormats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RBioFormats")| RBioFormats: an R interface to the Bio-Formats library | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataImport, Software |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats |
| System Requirements | Java (>= 1.7) |
| URL | https://github.com/aoles/RBioFormats |
| Bug Reports | https://github.com/aoles/RBioFormats/issues |
See More
| Suggests | BiocStyle, knitr, testthat, xml2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | SpatialOmicsOverlay |
| Suggests Me | SpatialFeatureExperiment |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RBioFormats_1.7.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RBioFormats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RBioFormats |
| Bioc Package Browser | https://code.bioconductor.org/browse/RBioFormats/ |
| Package Short Url | https://bioconductor.org/packages/RBioFormats/ |
| Package Downloads Report | Download Stats |