msdata

Various Mass Spectrometry raw data example files

Bioconductor version: Release (3.20)

Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("msdata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, MassSpectrometryData
Version	0.46.0
License	GPL (>= 2)
Depends	R (>= 3.5.0)
Imports
System Requirements
URL

Suggests	xcms, mzR, MSnbase
Linking To
Enhances
Depends On Me
Imports Me	MsQuality
Suggests Me	IPO, koinar, MetaboAnnotation, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, peakPantheR, PSMatch, QFeatures, Spectra, SpectraQL, TargetDecoy, xcms, RforProteomics
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	msdata_0.46.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/msdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/msdata
Package Short Url	https://bioconductor.org/packages/msdata/
Package Downloads Report	Download Stats