viper

This is the released version of viper; for the devel version, see viper.

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: Release (3.20)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("viper")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

biocViews	FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version	1.40.0
In Bioconductor since	BioC 2.14 (R-3.1) (10.5 years)
License	file LICENSE
Depends	R (>= 2.14.0), Biobase, methods
Imports	mixtools, stats, parallel, e1071, KernSmooth
System Requirements
URL

Suggests	bcellViper
Linking To
Enhances
Depends On Me	vulcan, aracne.networks
Imports Me	diggit, RTN, diggitdata
Suggests Me	decoupleR, easier, MOMA, dorothea, vulcandata
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	viper_1.40.0.tar.gz
Windows Binary (x86_64)	viper_1.40.0.zip (64-bit only)
macOS Binary (x86_64)	viper_1.40.0.tgz
macOS Binary (arm64)	viper_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/viper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/viper
Bioc Package Browser	https://code.bioconductor.org/browse/viper/
Package Short Url	https://bioconductor.org/packages/viper/
Package Downloads Report	Download Stats