marray
Exploratory analysis for two-color spotted microarray data
Bioconductor version: Release (3.20)
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>
Citation (from within R, enter
citation("marray")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("marray")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("marray")| marray Normalization | R Script | |
| marray Overview | R Script | |
| marrayClasses Overview | R Script | |
| marrayClasses Tutorial (short) | R Script | |
| marrayInput Introduction | R Script | |
| marrayPlots Overview | R Script | |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.84.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
| License | LGPL |
| Depends | R (>= 2.10.0), limma, methods |
| Imports | |
| System Requirements | |
| URL | http://www.maths.usyd.edu.au/u/jeany/ |
See More
| Suggests | tkWidgets |
| Linking To | |
| Enhances | |
| Depends On Me | CGHbase, convert, dyebias, MineICA, nnNorm, OLIN, RBM, stepNorm, TurboNorm, beta7, dyebiasexamples |
| Imports Me | arrayQuality, ChAMP, methylPipe, MSstats, nnNorm, OLIN, OLINgui, piano, stepNorm, timecourse |
| Suggests Me | DEGraph, Mfuzz, hexbin |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | marray_1.84.0.tar.gz |
| Windows Binary (x86_64) | marray_1.84.0.zip (64-bit only) |
| macOS Binary (x86_64) | marray_1.84.0.tgz |
| macOS Binary (arm64) | marray_1.83.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/marray |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/marray |
| Bioc Package Browser | https://code.bioconductor.org/browse/marray/ |
| Package Short Url | https://bioconductor.org/packages/marray/ |
| Package Downloads Report | Download Stats |