basilisk
Freezing Python Dependencies Inside Bioconductor Packages
Bioconductor version: Release (3.20)
Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.
Author: Aaron Lun [aut, cre, cph], Vince Carey [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("basilisk")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("basilisk")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("basilisk")| Motivation | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | GPL-3 |
| Depends | reticulate |
| Imports | utils, methods, parallel, dir.expiry, basilisk.utils(>= 1.15.1) |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/LTLA/basilisk/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat, callr |
| Linking To | |
| Enhances | |
| Depends On Me | scviR |
| Imports Me | BiocSklearn, cbpManager, cfTools, crisprScore, densvis, FLAMES, HiCool, MACSr, MOFA2, ontoProc, orthos, Pirat, Rcwl, recountmethylation, ReUseData, scifer, scPipe, SimBu, sketchR, snifter, spatialDE, velociraptor, zellkonverter |
| Suggests Me | basilisk.utils, CuratedAtlasQueryR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | basilisk_1.18.0.tar.gz |
| Windows Binary (x86_64) | basilisk_1.18.0.zip |
| macOS Binary (x86_64) | basilisk_1.18.0.tgz |
| macOS Binary (arm64) | basilisk_1.17.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/basilisk |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/basilisk |
| Bioc Package Browser | https://code.bioconductor.org/browse/basilisk/ |
| Package Short Url | https://bioconductor.org/packages/basilisk/ |
| Package Downloads Report | Download Stats |