MetaNeighbor
Single cell replicability analysis
Bioconductor version: Release (3.20)
MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.
Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]
Maintainer: Stephan Fischer <fischer at cshl.edu>
Citation (from within R, enter
citation("MetaNeighbor")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaNeighbor")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaNeighbor")| MetaNeighbor user guide | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5) |
| Imports | grDevices, graphics, methods, stats (>= 3.4), utils (>= 3.4), Matrix (>= 1.2), matrixStats (>= 0.54), beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1.2), SummarizedExperiment(>= 1.12), SingleCellExperiment, igraph, dplyr, tidyr, tibble, ggplot2 |
| System Requirements | |
| URL |
See More
| Suggests | knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2), UpSetR |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaNeighbor_1.26.0.tar.gz |
| Windows Binary (x86_64) | MetaNeighbor_1.26.0.zip |
| macOS Binary (x86_64) | MetaNeighbor_1.26.0.tgz |
| macOS Binary (arm64) | MetaNeighbor_1.25.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaNeighbor |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaNeighbor |
| Bioc Package Browser | https://code.bioconductor.org/browse/MetaNeighbor/ |
| Package Short Url | https://bioconductor.org/packages/MetaNeighbor/ |
| Package Downloads Report | Download Stats |