To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

In most cases, you don't need to download the package archive at all.

RNAseqData.HNRNPC.bam.chr14

   

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: 3.2

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

Documentation

PDF   Reference Manual

Details

biocViews ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version 0.8.0
License LGPL
Depends
Imports
LinkingTo
Suggests GenomicAlignments, BiocInstaller
SystemRequirements
Enhances
URL http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me
Imports Me
Suggests Me BiocParallel, GenomicAlignments, GenomicFiles, roar, Rsamtools, SplicingGraphs
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RNAseqData.HNRNPC.bam.chr14_0.8.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center