To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")

In most cases, you don't need to download the package archive at all.

LungCancerLines

Reads from Two Lung Cancer Cell Lines

Bioconductor version: 3.2

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Author: Cory Barr, Michael Lawrence

Maintainer: Cory Barr <barr.cory at gene.com>

Citation (from within R, enter citation("LungCancerLines")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")

Documentation


PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, Genome, LungCancerData, RNASeqData
Version	0.8.0
License	Artistic-2.0
Depends
Imports	Rsamtools
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	gmapR, HTSeqGenie, VariantTools
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	LungCancerLines_0.8.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/LungCancerLines/
Package Downloads Report	Download Stats

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