- Home
- Bioconductor 3.2
- Software Packages
- variancePartition
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("variancePartition")
In most cases, you don't need to download the package archive at all.
variancePartition
|
Quantifying and interpreting drivers of variation in complex gene expression studies
Bioconductor version: 3.2
Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses linear mixed model to quantify variation in gene expression attributable to individual, tissue, time point, or technical variables.
Author: Gabriel E. Hoffman
Maintainer: Gabriel E. Hoffman <gabriel.hoffman at mssm.edu>
Citation (from within R,
enter citation("variancePartition")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("variancePartition")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("variancePartition")
| variancePartition | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, RNASeq, Regression, Software |
| Version | 1.0.7 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | GPL (>= 2) |
| Depends | ggplot2, foreach, Biobase, methods |
| Imports | lme4, iterators, reshape2, doParallel, limma, dendextend |
| LinkingTo | |
| Suggests | edgeR, knitr, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | variancePartition_1.0.7.tar.gz |
| Windows Binary | variancePartition_1.0.7.zip |
| Mac OS X 10.6 (Snow Leopard) | variancePartition_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | variancePartition_1.0.7.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/variancePartition/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/variancePartition/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
