To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaSeqMap")

In most cases, you don't need to download the package archive at all.

rnaSeqMap

rnaSeq secondary analyses

Bioconductor version: 3.2

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("rnaSeqMap")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaSeqMap")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaSeqMap")

PDF		rnaSeqMap primer
PDF		Reference Manual

biocViews	Annotation, DifferentialExpression, GeneExpression, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization
Version	2.28.0
In Bioconductor since	BioC 2.7 (R-2.12) (5.5 years)
License	GPL-2
Depends	R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments
Imports	GenomicRanges, IRanges, edgeR, DESeq, DBI
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	ampliQueso
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	rnaSeqMap_2.28.0.tar.gz
Windows Binary	rnaSeqMap_2.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	rnaSeqMap_2.28.0.tgz
Mac OS X 10.9 (Mavericks)	rnaSeqMap_2.28.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/rnaSeqMap/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/rnaSeqMap/
Package Downloads Report	Download Stats

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