To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 3.2

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Li-Gen Wang and Giovanni Dall'Olio.

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

HTML		Statistical analysis and visualization of functional profiles for gene and gene clusters
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization
Version	2.4.3
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	Artistic-2.0
Depends	R (>= 3.1.0)
Imports	DOSE, GOSemSim, AnnotationDbi, methods, stats4, plyr, ggplot2, GO.db, KEGGREST, magrittr, qvalue, topGO
LinkingTo
Suggests	BiocStyle, KEGG.db, knitr, org.Hs.eg.db, pathview, ReactomePA, RDAVIDWebService
SystemRequirements
Enhances
URL	https://github.com/GuangchuangYu/clusterProfiler
BugReports	https://github.com/GuangchuangYu/clusterProfiler/issues
Depends On Me
Imports Me
Suggests Me	ChIPseeker, DOSE, GOSemSim, ReactomePA
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	clusterProfiler_2.4.3.tar.gz
Windows Binary	clusterProfiler_2.4.3.zip
Mac OS X 10.6 (Snow Leopard)	clusterProfiler_2.4.1.tgz
Mac OS X 10.9 (Mavericks)	clusterProfiler_2.4.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report	Download Stats

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