To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chimera")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: 3.2
This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.
Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero
Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>
Citation (from within R,
enter citation("chimera")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chimera")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chimera")
chimera | ||
Reference Manual | ||
Text | NEWS |
biocViews | Infrastructure, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
License | Artistic-2.0 |
Depends | Biobase, GenomicRanges(>= 1.13.3), Rsamtools(>= 1.13.1), GenomicAlignments, methods, AnnotationDbi, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens |
Imports | |
LinkingTo | |
Suggests | BiocParallel, geneplotter |
SystemRequirements | STAR, TopHat, bowtie and samtools are required for some functionalities |
Enhances | Rsubread, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, BSgenome.Mmusculus.UCSC.mm10, TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene |
URL | |
Depends On Me | oneChannelGUI |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | chimera_1.12.0.tar.gz |
Windows Binary | chimera_1.12.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | chimera_1.12.0.tgz |
Mac OS X 10.9 (Mavericks) | chimera_1.12.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/chimera/tree/release-3.2 |
Package Short Url | http://bioconductor.org/packages/chimera/ |
Package Downloads Report | Download Stats |
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