To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")
In most cases, you don't need to download the package archive at all.
RedeR
|
Interactive visualization and manipulation of nested networks
Bioconductor version: 3.2
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("RedeR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedeR")
| Main vignette: interactive visualization and manipulation of nested networks | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization |
| Version | 1.18.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15), methods, igraph |
| Imports | RCurl, XML, pvclust |
| LinkingTo | |
| Suggests | PANR |
| SystemRequirements | Java Runtime Environment (>= 6) |
| Enhances | |
| URL | http://genomebiology.com/2012/13/4/R29 |
| Depends On Me | Fletcher2013b |
| Imports Me | Mulder2012, PANR, RTN |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RedeR_1.18.1.tar.gz |
| Windows Binary | RedeR_1.18.1.zip |
| Mac OS X 10.6 (Snow Leopard) | RedeR_1.18.0.tgz |
| Mac OS X 10.9 (Mavericks) | RedeR_1.18.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RedeR/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/RedeR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
