To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DChIPRep")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 3.2
The DChIPRep package implements a methodology to assess differences between chromatin modification profiles in replicated ChIP-Seq studies as described in Chabbert et. al - http://www.dx.doi.org/10.15252/msb.20145776.
Author: Bernd Klaus [aut, cre], Christophe Chabbert [aut]
Maintainer: Bernd Klaus <bernd.klaus at embl.de>
Citation (from within R,
enter citation("DChIPRep")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DChIPRep")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DChIPRep")
HTML | Introduction to the DChIPRep package | |
Reference Manual | ||
Text | NEWS |
biocViews | ChIPSeq, Sequencing, Software |
Version | 1.0.4 |
In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
License | MIT + file LICENCE |
Depends | R (>= 3.2.0) |
Imports | methods, ggplot2, DESeq2, fdrtool, reshape2, GenomicRanges, smoothmest, plyr, tidyr, assertthat, S4Vectors |
LinkingTo | |
Suggests | mgcv, testthat, BiocStyle, knitr, rmarkdown |
SystemRequirements | Python 2.7, HTSeq (>= 0.6.1), numpy, argparse, sys |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | DChIPRep_1.0.4.tar.gz |
Windows Binary | DChIPRep_1.0.4.zip |
Mac OS X 10.6 (Snow Leopard) | DChIPRep_1.0.2.tgz |
Mac OS X 10.9 (Mavericks) | DChIPRep_1.0.4.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/DChIPRep/tree/release-3.2 |
Package Short Url | http://bioconductor.org/packages/DChIPRep/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: