To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHbase")

In most cases, you don't need to download the package archive at all.

CGHbase

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: 3.2

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHbase")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHbase")


PDF		Reference Manual

biocViews	CopyNumberVariation, Infrastructure, Microarray, Software
Version	1.30.0
In Bioconductor since	BioC 2.3 (R-2.8) (7.5 years)
License	GPL
Depends	R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	CGHcall, CGHnormaliter, CGHregions, GeneBreak, sigaR
Imports Me	CGHnormaliter, plrs, QDNAseq
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	CGHbase_1.30.0.tar.gz
Windows Binary	CGHbase_1.30.0.zip
Mac OS X 10.6 (Snow Leopard)	CGHbase_1.30.0.tgz
Mac OS X 10.9 (Mavericks)	CGHbase_1.30.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CGHbase/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/CGHbase/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: