MSMB 1.22.0
(Online version of the book)[https://www.huber.embl.de//msmb]
library("MSMB")
## Loading required package: tibble
dir(system.file("extdata", package = "MSMB"))
## [1] "01126211_NB8_I025.fcs" "01247181_NB06_I025.fcs" "02276161_NB8_I025.fcs"
## [4] "03157141_NB06_I025.fcs" "05107251_NB06_I025.fcs" "06226101_NB8_I025.fcs"
## [7] "07115141_NB8_I025.fcs" "07215281_NB8_I025.fcs" "08045071_NB8_I025.fcs"
## [10] "09225121_NB8_I025.fcs" "10175181_NB8_I025.fcs" "10276181_NB8_I025.fcs"
## [13] "11145351_NB8_I025.fcs" "12015151_NB8_I025.fcs" "PaintedTurtles.txt"
## [16] "annotation.txt" "statecancerdeaths.csv"
dir(system.file("images", package = "MSMB"))
## [1] "hiv.png" "image-Cy3.tif" "image-DAPI.tif" "image-FITC.tif"
## [5] "mosquito.png"
dir(system.file("data", package = "MSMB"))
## [1] "brcalymphnode.RData" "ukraine_coords.RData" "ukraine_dists.RData"
dir(system.file("scripts", package = "MSMB"))
## [1] "ukraine-dists.R"
sessionInfo()
## R version 4.4.0 beta (2024-04-15 r86425)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 22.04.4 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.19-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] MSMB_1.22.0 tibble_3.2.1 BiocStyle_2.32.0
##
## loaded via a namespace (and not attached):
## [1] vctrs_0.6.5 cli_3.6.2 knitr_1.46
## [4] rlang_1.1.3 xfun_0.43 jsonlite_1.8.8
## [7] glue_1.7.0 htmltools_0.5.8.1 sass_0.4.9
## [10] fansi_1.0.6 rmarkdown_2.26 evaluate_0.23
## [13] jquerylib_0.1.4 fastmap_1.1.1 yaml_2.3.8
## [16] lifecycle_1.0.4 bookdown_0.39 BiocManager_1.30.22
## [19] compiler_4.4.0 pkgconfig_2.0.3 digest_0.6.35
## [22] R6_2.5.1 utf8_1.2.4 pillar_1.9.0
## [25] magrittr_2.0.3 bslib_0.7.0 tools_4.4.0
## [28] cachem_1.0.8