muleaData

Genes Sets for Functional Enrichment Analysis with the 'mulea' R Package

Bioconductor version: Release (3.19)

ExperimentHubData package for the 'mulea' comprehensive overrepresentation and functional enrichment analyser R package. Here we provide ontologies (gene sets) in a data.frame for 27 different organisms, ranging from Escherichia coli to human, all acquired from publicly available data sources. Each ontology is provided with multiple gene and protein identifiers. Please see the NEWS file for a list of changes in each version.

Author: Eszter Ari [aut, cre] , Márton Ölbei [aut] , Lejla Gul [aut], Balázs Bohár [aut] , Tamás Stirling [aut]

Maintainer: Eszter Ari <arieszter at gmail.com>

Citation (from within R, enter citation("muleaData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("muleaData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muleaData")

muleaData	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Arabidopsis_thaliana_Data, Bacillus_subtilis_Data, Caenorhabditis_elegans_Data, ChIPSeqData, DNASeqData, Danio_rerio_Data, Drosophila_melanogaster_Data, Escherichia_coli_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Pan_troglodytes_Data, Pseudomonas_aeruginosa_Data, Rattus_norvegicus_Data, Saccharomyces_cerevisiae_Data, Staphylococcus_aureus_Data, miRNAData
Version	1.0.0
License	MIT + file LICENSE
Depends
Imports
System Requirements
URL	https://github.com/ELTEbioinformatics/muleaData
Bug Reports	https://support.bioconductor.org/tag/muleaData/issues

Suggests	knitr, rmarkdown, ExperimentHub, dplyr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	muleaData_1.0.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/muleaData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/muleaData
Package Short Url	https://bioconductor.org/packages/muleaData/
Package Downloads Report	Download Stats