STexampleData
Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format
Bioconductor version: Release (3.19)
Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.
Author: Lukas M. Weber [aut, cre] 
, Yixing E. Dong [aut]
Maintainer: Lukas M. Weber <lmweberedu at gmail.com>
citation("STexampleData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("STexampleData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("STexampleData")| STexampleData overview | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData |
| Version | 1.12.3 |
| License | MIT + file LICENSE |
| Depends | ExperimentHub, SingleCellExperiment, SpatialExperiment |
| Imports | utils |
| System Requirements | |
| URL | https://github.com/lmweber/STexampleData |
| Bug Reports | https://github.com/lmweber/STexampleData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, BumpyMatrix, HDF5Array |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SpotSweeper, escheR, ggsc, ggspavis, nnSVG, smoothclust, spoon, tpSVG |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | STexampleData_1.12.3.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/STexampleData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/STexampleData |
| Package Short Url | https://bioconductor.org/packages/STexampleData/ |
| Package Downloads Report | Download Stats |