biodbKegg
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see biodbKegg.
biodbKegg, a library for connecting to the KEGG Database
Bioconductor version: Release (3.19)
The biodbKegg library is an extension of the biodb framework package that provides access to the KEGG databases Compound, Enzyme, Genes, Module, Orthology and Reaction. It allows to retrieve entries by their accession numbers. Web services like "find", "list" and "findExactMass" are also available. Some functions for navigating along the pathways have also been implemented.
Author: Pierrick Roger [aut, cre] 
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
citation("biodbKegg")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biodbKegg")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biodbKegg")| Introduction to the biodbKegg package. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, KEGG, Pathways, Software |
| Version | 1.10.2 |
| In Bioconductor since | BioC 3.14 (R-4.1) (3 years) |
| License | AGPL-3 |
| Depends | R (>= 4.1) |
| Imports | R6, biodb(>= 1.4.2), chk, lifecycle |
| System Requirements | |
| URL | https://github.com/pkrog/biodbKegg |
| Bug Reports | https://github.com/pkrog/biodbKegg/issues |
See More
| Suggests | BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, igraph, magick, lgr, withr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biodbKegg_1.10.2.tar.gz |
| Windows Binary (x86_64) | biodbKegg_1.10.2.zip (64-bit only) |
| macOS Binary (x86_64) | biodbKegg_1.10.2.tgz |
| macOS Binary (arm64) | biodbKegg_1.10.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biodbKegg |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biodbKegg |
| Bioc Package Browser | https://code.bioconductor.org/browse/biodbKegg/ |
| Package Short Url | https://bioconductor.org/packages/biodbKegg/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |